My Google Scholar Profile

Barley, A.J., J.E. Cordes, J.M. Walker, R.C. Thomson. 2021. Genetic diversity and the origins of parthenogenesis in the teiid lizard Aspidoscelis laredoensis. Molecular Ecology doi:10.1111/mec.16213

Barley, A.J., T.W. Reeder, A. Nieto-Montes de Oca, C.J. Cole, R.C. Thomson. 2021. A new diploid parthenogenetic whiptail lizard from Sonora, Mexico is the predicted ‘missing link’ in the evolutionary transition to polyploidy. The American Naturalist 198:295–309. Available

Barley, A.J., M.B. Sanguila, R.M. Brown. 2021. A new species of sun skink (Reptilia: Scincidae: Eutropis). Philippine Journal of Systematic Biology 14:1–18. PDF

IUCN SSC Skink Specialist Group. 2021. Conversation status of the world’s skinks (Scincidae): taxonomic and geographic patterns in extinction risk. Biological Conservation 257:109101. Available

Weinell, J.L., A.J. Barley, C.D. Siler, N.L. Orlov, N.B. Ananjeva, J.R. Oaks, F.T. Burbrink, R.M. Brown. 2020. Phylogenetic relationships and biogeographic range evolution in cat-eyed snakes, Boiga (Serpentes: Colubridae). Zoological Journal of the Linnean SocietyAvailable

Barley, A.J., A.C. Diesmos, C.D. Siler, C.M. Martinez, R.M. Brown. 2020. Taxonomic revision of Philippine sun skinks (Reptilia: Squamata: Scincidae: Eutropis), and descriptions of eight new species. Herpetological Monographs 34:39–70. Available

Pauly, G.B., M.C. Shaulsky, A.J. Barley, S. Kennedy-Gold, S. Stewart, S. Keeney, R.C. Thomson. 2020. Morphological change during rapid population expansion confounds leopard frog identifications in southwestern United States. Copeia 108:299–308. Available

Gray, L.N., A.J. Barley, D.M. Hillis, C.J. Pavón-Vázquez, S. Poe, B.A. White. 2020. Does breeding season variation affect evolution of a sexual signaling trait in a tropical lizard clade? Ecology and Evolution 10:3738–3746. Available

Campillo, L.C., A.J. Barley, R.C. Thomson. 2020. Model-based species delimitation: are coalescent species reproductively isolated? Systematic Biology 69:708–721. Cover Article

Barley, A.J., A. Nieto-Montes de Oca, T.W. Reeder, N.L. Manríquez–Morán, J.C.A. Monroy, O. Hernández-Gallegos, R.C. Thomson. 2019. Complex patterns of hybridization and introgression across evolutionary timescales in Mexican whiptail lizards (Aspidoscelis). Molecular Phylogenetics and Evolution. 132:284–295. Available

Gray, L.N., A.J. Barley, S. Poe, R.C. Thomson, A. Nieto-Montes de Oca, I.J. Wang. 2019. Phylogeography of a widespread lizard complex reflects patterns of both geographic an ecological isolation. Molecular Ecology. 28:644–657. Available

Richards, E. J., J.M. Brown, A.J. Barley, R. Chong, R.C. Thomson. 2018. Variation across mitochondrial gene trees provides evidence for systematic error: How much gene tree variation is biological? Systematic Biology. 67:847–860. Available

Barley, A.J., J.M. Brown, R.C. Thomson. 2018. Impact of model violations on the inference of species boundaries under the multispecies coalescent. Systematic Biology. 67:269–284. Available

Nieto-Montes de Oca, A., A.J. Barley, R.N. Meza-Lázaro, U.O. García-Vázquez, J.G. Zamora-Abrego, R.C. Thomson, A.D. Leaché. 2017. Phylogenomics and species delimitation in the knob-scaled lizards of the genus Xenosaurus (Squamata: Xenosauridae) using ddRADseq data reveal a substantial underestimation of diversity. Molecular Phylogenetics and Evolution 106:241–253. Available

Barley, A.J., R.C. Thomson. 2016. Assessing the performance of DNA barcoding using posterior predictive simulations. Molecular Ecology 25:1944–1957. (Highlighted in ‘Perspective’: Coalescing molecular evolution and DNA barcoding, Pp. 1908–1910). Manuscript Perspective

Datta-Roy, A., V. Deepak, C. Sidharthan, A.J. Barley, K.P. Karanth. 2015. An addition to the endemic Indian radiation of Eutropis: Phylogenetic position of Eutropis dissimilis Hallowell (Squamata:Scincidae). Zootaxa 4027:145–150.

Barley, A.J., P.J. Monnahan, R.C. Thomson, L.L. Grismer, R.M. Brown. 2015. Sun skink landscape genomics: assessing the roles of microevolutionary processes in shaping genetic and phenotypic diversity across a heterogeneous and fragmented landscape. Molecular Ecology 24:1696–1712. Cover Article

Barley, A.J., A. Datta-Roy, K.P. Karanth, R.M. Brown. 2014. Sun skink diversification across the Indian-Southeast Asian biogeographical interface. Journal of Biogeography 42:292–304. Available

Brown, R.M., J.A. Weghorst, K.V. Olson, M.R.M. Duya, A.J. Barley, M.V. Duya, M. Shekelle, I. Neri-Arboleda, J.A. Esselstyn, N.J. Dominy, P.S. Ong, G.L. Moritz, A. Luczon, M.L.L. Diesmos, A.C. Diesmos, C.D. Siler. 2014. Conservation genetics of the Philippine tarsier: cryptic genetic variation restructures conservation priorities for an island archipelago primate. PLOS ONE 9, e104340. Available

Duellman, W.E., A.J. Barley, P.J. Venegas. 2014. Cryptic species diversity in marsupial frogs (Anura: Hemiphractidae: Gastrotheca) in the Andes of northern Peru. Zootaxa 3768:159–177.

Gonzalez, P., Y. Su, C.D. Siler, A.J. Barley, M.B. Sanguila, A.C. Diesmos, R.M. Brown. 2014. Archipelago colonization by ecologically dissimilar amphibians: evaluating the expectation of common evolutionary history of geographical diffusion in co-distributed rainforest tree frogs in islands of Southeast Asia. Molecular Phylogenetics and Evolution 72:35–41. Available

Barley, A.J., J. White, A.C. Diesmos, R.M. Brown. 2013. The challenge of species delimitation at the extremes: diversification without morphological change in Philippine sun skinks. Evolution 67:3556–3572. Available

Brown, R.M., C.D. Siler, C.H. Oliveros, J.A. Esselstyn, A.C. Diesmos, P.A. Hosner, C.W. Linkem, A.J. Barley, J.R. Oaks, M.B. Sanguila, L.J. Welton, D.S. Blackburn, R.G. Moyle, A.T. Peterson, A.C. Alcala. 2013. Evolutionary processes of diversification in a model island archipelago. Annual Review of Ecology, Evolution and Systematics 44:411–435. Available

McLeod, D.S., J.K. Kelly, A.J. Barley. 2012. “Same-same but different”: another new species of the Limnonectes kuhlii complex from Thailand (Anura: Dicroglossidae). Russian Journal of Herpetology 19:261–274.

McLeod, D.S., S.J. Horner, C. Husted, A.J. Barley, D. Iskandar. 2011. “Same-same, but different”: an unusual new species of the Limnonectes kuhlii complex from West Sumatra (Anura: Dicroglossidae). Zootaxa 2883:52–64.

Fuiten, A.M., L.J. Welton, A.C. Diesmos, A.J. Barley, B. Oberheide, M.V. Duya, E.L.B. Rico, R.M. Brown. 2011. A New Species of Stream Frog (Sanguirana) from the Mountains of Luzon Island, Philippines. Herpetologica 67:89–103. Available

Barley, A.J., P.Q. Spinks, R.C. Thomson, H.B Shaffer. 2010. Fourteen nuclear genes provide phylogenetic resolution for difficult nodes in the turtle tree of life. Molecular Phylogenetics and Evolution 55:1189­–1194. Available

Spinks, P.Q., R.C. Thomson, A.J. Barley, C.E. Newman, H.B. Shaffer. 2010. Testing avian, squamate, and mammalian nuclear markers for cross amplification in turtles. Conservation Genetics Resources 2:127–129. Available

Barley, A.J., R.M. Coleman. 2010. Habitat structure directly affects aggression in convict cichlids Archocentrus nigrofasciatus. Current Zoology 56:52–56. PDF